Aaron Atkinson's repositories
cBioPortal-Python-Scripts-for-flat-file-generation
Customizable python scripts for the concatenation of MAF files for cBioPortal.
Language:PythonGPL-3.0000
GATK_CopyRatio_IlluminaCA_Parser
A Pandas script to convert GATK Copy Ratio outputs into tsv files for upload into the Illumina Cohort Analyzer
Language:Python000
Pandas_flatfile_merge
Pandas flat file merge. Could elaborate to duplicate, parse, and erase temp columns.
Language:Python000
Python-simple-VCF-filter
Filtering VCFs to maintain header, but filter keywords (in this case "Foundation").
Language:Python000
VCF_TSV_ComplexIndel_MNV_filter
A quick Pandas script to strip complex indels and MNVs from VCFs/TSVs for Illumina Cohort Analyzer Upload
Language:Python000