AADavin

mcmc-date

Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.

bacterial_dating_aerobic_predictor

Prediction of aerobicity in extant and ancient genomes

drawsvg

Programmatically generate SVG (vector) images, animations, and interactive Jupyter widgets

OpenRDP

An open-source re-implementation of the RDP4 recombination detection program

GATC

Genetic Algorithm for gene Tree Construction/Correction optimal under sequence likelihood and reconciliation score

Ghost_abba_baba

Genome_annotations

Annotation workflow for archaeal and bacterial genomes from the Spang team

haishoku

A development tool for grabbing the dominant color or representative color palette from an image

gan

📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

orthofisher

a broadly applicable tool for automated gene identification and retrieval

kanjium

The ultimate kanji resource

AncientMetagenomeDir

Repository containing lists of all published ancient metagenomic (and related) samples and libraries

Proof-Of-Humanity

Proof-of-Humanity v1 smart contracts

ubi

Universal Basic Income token.

gargammel

gargammel is an ancient DNA simulator

miller

Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON

python-newick

python package to read and write the Newick format

dash_sample_dashboard

Build a Complex Reporting Dashboard using Dash and Plotly

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

Civilizations

A NetLogo simulation to model "civilization"-style games such as Age of Empires.

NetLogo

turtles, patches, and links for kids, teachers, and scientists

epitran

A tool for transcribing orthographic text as IPA (International Phonetic Alphabet)

CogNet

CogNet: a large-scale, high-quality cognate database for 338 languages, 1.07M words, and 8.1 million cognates

svglib

Read SVG files and convert them to other formats.

anki-remote-decks

Addon for Anki - Creating remote decks in Google Docs

covid-19

COVID-19 Futures, Explained With Playable Simulations

nbinteract

Create interactive webpages from Jupyter Notebooks

svgpathtools

A collection of tools for manipulating and analyzing SVG Path objects and Bezier curves.

RISE

RISE: "Live" Reveal.js Jupyter/IPython Slideshow Extension

Divvier

A program for divvying or partially filtering multiple sequence alignments