Anastasia Brovkin's repositories
GraphVar_2.0
GitHub for GraphVar 2.0: A user-friendly toolbox for machine learning on functional connectivity measures.
automaticanalysis
Automatic analysis
BrainSpace
BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |
fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
NBS-Predict
A prediction-based extension of network-based statistics.
nest-simulator
The NEST simulator
nh2020-jupyterhub
hub.neurohackademy.org: Deployment config, docker image, documentation.
tvb-framework
The Virtual Brain framework. Requires tvb-library
3d-force-graph
3D force-directed graph component using ThreeJS/WebGL
boutiques
A cross-platform descriptive command-line framework for applications
tvb-library
The science behind The Virtual Brain
clinica
Software platform for clinical neuroimaging studies
course-content
Summer course content for Neuromatch Academy
deep-image-prior
Image restoration with neural networks but without learning.
DeOldify
A Deep Learning based project for colorizing and restoring old images (and video!)
landmark-reg
Landmark based registration of brain imaging volumes
mindboggle
Automated anatomical brain label/shape analysis software (+ website)
netpyne
A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.
neuroshapes
Open schemas for F.A.I.R. neuroscience data
ohbm2020-posters
Centralized registry of Jitsi rooms and pdfs for OHBM 2020 posters.
PySurfer
Cortical neuroimaging visualization in Python
pysurfing
Visualizing with Freesurfer using Python
resources
A collaborative list of resources for Computational Neuroscience
reStream
Stream your reMarkable screen over SSH.
tvb-pack
Useful super pack for working with TVB
tvb-root
Main TVB codebase