4D Nucleome Data Coordination and Integration Center

pairsqc

QC report generator for Hi-C pairs file

pipelines-cwl

Pipelines developed and used by 4DN-DCIC in Common Workflow Language

GiniQC

Tool for single-cell Hi-C quality control

docker-4dn-compartments-caller

docker-4dn-cut-and-run-pipeline

CUT&RUN Pipeline

docker-4dn-RE-checker

docker_templates

react-infinite

A browser-ready efficient scrolling container based on UITableView

rna-seq-pipeline

4DN RNA-seq pipeline, inherited from ENCODE RNA-seq pipeline

simple-s3fs

A simple (read-only) FUSE-based file system for S3 buckets.

post-deploy-cypress-tests

Initializes post-deployment Cypress tests for staging.4dnucleome.org

4dn-mc-viz

Experimenting with multi-contact genomics file format

docker-4dn-bamqc

docker-4dn-bedGraphToBigWig

docker-4dn-bedtobeddb

docker-4dn-bedtomultivec

docker-4dn-fastq-first-line

docker-4dn-hicQC

docker-4dn-mcoolQC

docker-4dn-mergefastq

docker-4dn-rna-strandedness

docker-fastqc

documentation_management

higlass

Fast contact matrix visualization for the web.

higlass-multicontact

View Multicontact Data in HiGlass

iMARGI-Docker

iMARGI-Docker distributes the iMARGI sequencing data processing pipeline

open-data-registry

A registry of publicly available datasets on AWS

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

submitpipeline

subprocess_middleware

Subprocess WSGI middleware and Pyramid tween.