4dn-dcic / hic2cool

Lightweight converter between hic and cool contact matrices.

4dn-dcic/hic2cool Issues

No weight column in the converted .mcool file
Updated 7 months ago1
hic2cool command not found on zsh
Closed 7 months ago3
Encoding problem while converting a Juicer matrix?
Updated 8 months ago6
hic2cool update is not compatible with write permissions on h5py 3.6.9
Closed 9 months ago
error: object header message is too large
Updated a year ago1
HOW to get cool files only with KR normalization
Updated a year ago
New .hic format
Updated 2 years ago1
hic2cooler not working with hic v9 formatting from Juicer v2
Updated 2 years ago1
h5py 3 requires mode argument
Updated 2 years ago
ValueError when converting hic file to cool file
Updated 2 years ago1
Multiprocessing Error
Updated 2 years ago1
hic2cool convert error with Juicer hic file
Closed 4 years ago2
zlib.error when converting hic to cool
Updated 4 years ago3
hic2cool conda version
Closed 4 years ago6
Calling Cooler.pixels raises KeyError: 'nnz' if multiple processes specified in hic2cool convert
Updated 4 years ago2
Error -3 while decompressing data
Closed 4 years ago7
Update requirements to allow newer versions
Closed 4 years ago5
faster conversion?
Closed 4 years ago3
Hic2cool convert error
Updated 4 years ago2
juicer hic (fragment level matrix) convert into cooler
Closed 4 years ago2
Error in converting .hic to .cool
Closed 5 years ago1
ability to convert selected chromosomes
Updated 5 years ago1
Installation problem
Closed 5 years ago5
Preserve chromosome names from hic
Closed 5 years ago2
pip version broken
Closed 5 years ago7
wrong chromosome names appear in warning messages
Closed 5 years ago1
hic2cool update
Closed 5 years ago4
cool required attributes not found in hic files converted to cool files
Closed 5 years ago11
Balancing weight inversion, or not
Closed 5 years ago1
memory issue
Updated 5 years ago5
how to output normalization counts?
Closed 5 years ago5
Type of start/end columns in cooler bins is int32
Closed 5 years ago4
Pip install error with os/lzma_stub.h
Closed 6 years ago1
IndexError: list index out of range
Closed 7 years ago7
key error
Closed 7 years ago1
unicode error
Closed 7 years ago3
Error converting hic file
Closed 7 years ago1
Installing hic2cool doesn't install executable
Closed 7 years ago1
Add signature string to `info` attributes
Closed 7 years ago2
Adds 'chr' to chromosome names already containing 'chr'
Closed 7 years ago2