4dn-dcic / fish_omics_format

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4DN FISH Omics Format (FOF) - Chromatin Tracing (CT)

This document describes the 4DN FISH Omics Format (FOF) - Chromatin Tracing (CT), a community data format designed for capturing and exchanging the results of FISH-omics experiments produced within the context of the 4D Nucleome (4DN) project.

The format consists of a series of ten tables with different requirement degrees. The full list of tables and instructions on how to use them can be found at: https://fish-omics-format.readthedocs.io/.

The image below gives a schematic view of the tables and their required (black), conditionally required (purple), recommended (blue), or optional (orange) content.