404563471

freess

免费机场

sklearn_tutorial

Materials for my scikit-learn tutorial

Sourcetrail

Sourcetrail - free and open-source interactive source explorer

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

SMEG

Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset

metamlst

MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.

MixInfect

Detect mixed infections in TB

DEploid

dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.

estMOI

estimating multiplicity of infection (MOI) using parasite sequence data

pfmix

R code for visualizing and inferring the structure of Plasmodium falciparum mixture

quanttb

QuantTB is a SNP based method to identify and quantify individual strains present in tuberculosis whole genome sequencing datasets.

MetaPalette

Metagenomic profiling and phylogenetic distances via common kmers

GSMer

Strain/species identification in metagenomes using genome-specific markers

MIDAS

An integrated pipeline for estimating strain-level genomic variation from metagenomic data

MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

StrainSeeker

A bacterial identification program for fast identification of bacterial strains from raw sequencing reads

wgfast

Whole genome focused array SNP typer

StrainFinder

StrainFinder

MetaMaps

Long-read metagenomic analysis

PathoScope

Pathoscope: Species identification and strain attribution with unassembled sequencing data

gatk

Official code repository for GATK versions 4 and up

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

medical-data

CABnet

DDR-dataset

A General-purpose High-quality Dataset for Diabetic Retinopathy Classification, Lesion Segmentation and Lesion Detection

ProgrammerXiaohuiPython

图书《漫画算法 Python版》的全部源代码

qligfep

pdbfixer

PDBFixer fixes problems in PDB files

pysnowball

雪球股票数据接口 python edition