| functions.R |
Contains helper functions used in other scripts |
| install_packages.R |
A handy script to install the required R packages |
| Celltype_Analysis.R |
Contains the eigenvalue analysis |
| merfishEigenAnalysis.R |
Eigenvalue analysis with MERFISH-simulated data |
| Skin_Cancer_Analysis.R |
Eigenvalue analysis with skin cancer data |
| splatterSimulation.R |
Generate Visium data from splatter-generated data |
| Merfish_Marker_Analysis.py |
Determine the marker genes of the MERFISH data |
| Merfish_to_Visium.R |
Create the Visium data from MERFISH data |
| MERFISH_Tangram.ipynb |
Deconvolution of MERFISH-simulated data by TANGRAM |
| spotLightTest.R |
Deconvolution using SpotLight. |