2015pp's repositories
signac
R toolkit for the analysis of single-cell chromatin data
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
gcr.io
:cyclone: sync the docker images of the gcr.io and quay.io
docs
Documentation for Docker Official Images in docker-library
dockerfile
some personally made dockerfile
rstudio
RStudio is an integrated development environment (IDE) for R
nucleus
Python and C++ code for reading and writing genomics data.
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
SCT-MoA
Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"
ssd_tensorflow
SSD implementation in development in TensorFlow