Ilya Kolpakov's repositories
anaic-analysis
A Novel Anti-Influenza Combined Therapy Assessed by Single Cell RNA-sequencing (analysis notebooks)
bayex
Bayesian networks for finitely-supported distributions
bpcqueue
A producer-aware MPMC bounded queue in C++11
BURST
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
scanpy-nix-flake
Nix flake packaging scanpy and jupyter notebook server
bwapy
Python bindings to bwa mem
camunda-client
Camunda External Task Client in Python
cnpy
library to read/write .npy and .npz files in C/C++
COSMOS2
Python Scientific Pipeline Management System
cubature
Adaptive integration routines by Steven G. Johnson with an automated build system
dotfiles
common configuration files for bash, vim, git e.t.c.
elixir
Elixir is a dynamic, functional language designed for building scalable and maintainable applications
HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
hice
Lean and fast mapper for Hi-C data based on minimap2
ilya-kolpakov.github.io
Site hosted on github.io
jsondate
JSON with datetime handling
jupyter-flake
jupyter server flakes with pluggable kernels
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
mofapy2-env
A python env with mofapy2 package packaged as a nix flake
optparse
C++ implementation of optparse (header-only fork of https://github.com/weisslj/cpp-optparse)
pyiqfeed
Python LIbrary for reading DTN's IQFeed
pylance-release
Documentation and issues for Pylance
pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
python-poetry-alpine
Alpine based Dockerfile for python poetry dependency management
r-mofa2-env
R environment with MOFA2 and tidyverse
requests-unixsocket
Use requests to talk HTTP via a UNIX domain socket
sbt-gitlab
sbt plugin to allow dependency resolution and artifact publishing for gitlab