Ilya Kolpakov's repositories
jupyter-flake
jupyter server flakes with pluggable kernels
r-mofa2-env
R environment with MOFA2 and tidyverse
mofapy2-env
A python env with mofapy2 package packaged as a nix flake
scanpy-nix-flake
Nix flake packaging scanpy and jupyter notebook server
anaic-analysis
A Novel Anti-Influenza Combined Therapy Assessed by Single Cell RNA-sequencing (analysis notebooks)
requests-unixsocket
Use requests to talk HTTP via a UNIX domain socket
pylance-release
Documentation and issues for Pylance
camunda-client
Camunda External Task Client in Python
sbt-gitlab
sbt plugin to allow dependency resolution and artifact publishing for gitlab
python-poetry-alpine
Alpine based Dockerfile for python poetry dependency management
bayex
Bayesian networks for finitely-supported distributions
ilya-kolpakov.github.io
Site hosted on github.io
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
hice
Lean and fast mapper for Hi-C data based on minimap2
bpcqueue
A producer-aware MPMC bounded queue in C++11
cnpy
library to read/write .npy and .npz files in C/C++
pyiqfeed
Python LIbrary for reading DTN's IQFeed
BURST
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
bwapy
Python bindings to bwa mem
pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
optparse
C++ implementation of optparse (header-only fork of https://github.com/weisslj/cpp-optparse)
COSMOS2
Python Scientific Pipeline Management System
HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
elixir
Elixir is a dynamic, functional language designed for building scalable and maintainable applications
jsondate
JSON with datetime handling
cubature
Adaptive integration routines by Steven G. Johnson with an automated build system
dotfiles
common configuration files for bash, vim, git e.t.c.