Ilya Kolpakov (1pakch)

1pakch

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Ilya Kolpakov's repositories

jupyter-flake

jupyter server flakes with pluggable kernels

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r-mofa2-env

R environment with MOFA2 and tidyverse

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mofapy2-env

A python env with mofapy2 package packaged as a nix flake

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scanpy-nix-flake

Nix flake packaging scanpy and jupyter notebook server

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anaic-analysis

A Novel Anti-Influenza Combined Therapy Assessed by Single Cell RNA-sequencing (analysis notebooks)

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requests-unixsocket

Use requests to talk HTTP via a UNIX domain socket

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pylance-release

Documentation and issues for Pylance

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camunda-client

Camunda External Task Client in Python

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sbt-gitlab

sbt plugin to allow dependency resolution and artifact publishing for gitlab

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python-poetry-alpine

Alpine based Dockerfile for python poetry dependency management

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bayex

Bayesian networks for finitely-supported distributions

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ilya-kolpakov.github.io

Site hosted on github.io

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minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

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hice

Lean and fast mapper for Hi-C data based on minimap2

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bpcqueue

A producer-aware MPMC bounded queue in C++11

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cnpy

library to read/write .npy and .npz files in C/C++

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pyiqfeed

Python LIbrary for reading DTN's IQFeed

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nixpkgs

Nix Packages collection

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BURST

An ultrafast optimal aligner for mapping large NGS data to large genome databases.

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bwapy

Python bindings to bwa mem

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pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano

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optparse

C++ implementation of optparse (header-only fork of https://github.com/weisslj/cpp-optparse)

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COSMOS2

Python Scientific Pipeline Management System

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HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

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elixir

Elixir is a dynamic, functional language designed for building scalable and maintainable applications

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jsondate

JSON with datetime handling

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cubature

Adaptive integration routines by Steven G. Johnson with an automated build system

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dotfiles

common configuration files for bash, vim, git e.t.c.

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