Ilya Kolpakov's repositories
jupyter-flake
jupyter server flakes with pluggable kernels
anaic-analysis
A Novel Anti-Influenza Combined Therapy Assessed by Single Cell RNA-sequencing (analysis notebooks)
scanpy-nix-flake
Nix flake packaging scanpy and jupyter notebook server
bwapy
Python bindings to bwa mem
camunda-client
Camunda External Task Client in Python
cubature
Adaptive integration routines by Steven G. Johnson with an automated build system
dotfiles
common configuration files for bash, vim, git e.t.c.
elixir
Elixir is a dynamic, functional language designed for building scalable and maintainable applications
ilya-kolpakov.github.io
Site hosted on github.io
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
mofapy2-env
A python env with mofapy2 package packaged as a nix flake
pyiqfeed
Python LIbrary for reading DTN's IQFeed
pylance-release
Documentation and issues for Pylance
pymc3
Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano
python-poetry-alpine
Alpine based Dockerfile for python poetry dependency management
r-mofa2-env
R environment with MOFA2 and tidyverse
requests-unixsocket
Use requests to talk HTTP via a UNIX domain socket
sbt-gitlab
sbt plugin to allow dependency resolution and artifact publishing for gitlab