Alexis Stutzman's repositories
cutNrun-pipeline
Analysis pipeline for CUT&RUN Data. Currently configured for use in the McKay Lab at UNC, but extensible elsewhere by changing configuration files.
dowen-chip-pipeline
Analysis pipeline for ChIP-seq data- this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf, in the Jill Dowen lab.
hic-pipeline-cooler
For generating .cool and .mcool files - this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf.
hic-pipeline-fanc
For generating fanc .hic files - this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf.
hic-pipeline-hicexplorer
For generating .h5 hicExplorer files - this was designed for use with SLURM on UNC Chapel Hill's computational cluster, longleaf.
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