0mician

CbGenomics

Genomics analysis of a set of Clostridium botulinum strains

MVDataExploration

Multivariate dataset exploration

SVM-FunTimes

Using least squares support vector machine (LS-SVM) for function estimation and time series prediction

ICTV-TaxonomyChallenge

Website and repository for the ICTV Taxonomy Challenge

SVM-Classification

Using least squares support vector machine (LS-SVM) for classification problems

.stumpwm.d

window manager config

amplicon_cb

analysis of two repeat-containing amplicons

ANN-Experiments

My experiments with artificial neural nets, along with some reports

Bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

BmMap

Burkholderia multivorans mapping to reference (poc script)

D11Polls

Poll app with django 1.11

django-bootstrap3

Bootstrap 3 integration with Django.

dlwpt-code

Code for the book Deep Learning with PyTorch by Eli Stevens, Luca Antiga, and Thomas Viehmann.

DNALibNanoQC

Assessment of combinatorial DNA libraries with nanopore sequencing

dotfiles

config files

mad2

milt0n.github.io

phaster_scripts

Small utility script to submit genomes to PHASTER for phage detection

phigaro

Phigaro is a scalable command-line tool for predictions phages and prophages from nucleid acid sequences (including metagenomes) and is based on phage genes HMMs and a smoothing window algorithm.

ProphET

SASpector

SASpector-1

SASpector: a tool for analysis of missing regions in (bacterial) draft genomes

SE-MEI

Tools for finding mobile element insertions from single-end datasets (slightly modified to get qname instead of tname)

sga

de novo sequence assembler using string graphs

SVM-UnsupervisedLearning

Using least squares support vector machine (LS-SVM) for unsupervised learning, kernel PCA

tango_with_django_19

A beginners guide to web programming with Python / Django 1.9

testing-jekyll

Testing jekyll for website deployment

UDSA

Ultra Deep Sequence Assembler, a fork of the UDS assembler "Slicembler"

VirSorter

Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)

WebsiteBBC

New website of the Belgian Brain Council (prototype, was not deployed in the end)