张宇亮 (zyllifeworld)

zyllifeworld

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Company:IGDB

Location:beijing

Home Page:www.zyllifeworld.com

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张宇亮's starred repositories

MM_ABM

Multiple Myeloma Mathematical Model

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VisCello

Viscello for Visualization of Single Cell Data

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HiNT

HiC for copy Number variation and Translocation detection

Language:PythonLicense:MITStargazers:36Issues:0Issues:0

PERCEPTION

Utilizing single-cell omics from patients tumor to predict response and resistance.

Stargazers:60Issues:0Issues:0
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SCALE

A tissue-specific single-cell biological age model

Language:RLicense:GPL-3.0Stargazers:9Issues:0Issues:0

CIDER

R package CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation

Language:HTMLLicense:MITStargazers:6Issues:0Issues:0

SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

Language:RStargazers:255Issues:0Issues:0

VirusScan

VirusScan Pipeline

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spectra

Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms

Language:PythonLicense:MITStargazers:149Issues:0Issues:0

CollecTRI

Gene regulatory network containing signed transcription factor-target gene interactions

Language:RLicense:GPL-3.0Stargazers:54Issues:0Issues:0

cNMF

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

Language:Jupyter NotebookLicense:MITStargazers:264Issues:0Issues:0

ml_mmrf

Machine Learning with data from the Multiple Myeloma Research Foundation

Language:Jupyter NotebookLicense:MITStargazers:8Issues:0Issues:0

singscore

An R/Bioconductor package that implements a single-sample molecular phenotyping approach

Language:RStargazers:40Issues:0Issues:0

appeears

Interface to the NASA AppEEARS API

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starfysh

Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:97Issues:0Issues:0
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liger

R package for integrating and analyzing multiple single-cell datasets

Language:RLicense:GPL-3.0Stargazers:382Issues:0Issues:0

magpie

Magpie contains a number of scripts for running Big Data software in HPC environments, including Hadoop and Spark. There is support for Lustre, Slurm, Moab, Torque. LSF, Flux, and more.

Language:ShellLicense:GPL-2.0Stargazers:191Issues:0Issues:0

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:1332Issues:0Issues:0

GCP_MM

Genomic Classification and Individualized Prognosis in Newly Diagnosed Multiple Myeloma

Language:Jupyter NotebookStargazers:4Issues:0Issues:0
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hmftools

Various algorithms for analysing genomics data

Language:JavaLicense:GPL-3.0Stargazers:189Issues:0Issues:0

samplot

Plot structural variant signals from many BAMs and CRAMs

Language:PythonLicense:MITStargazers:515Issues:0Issues:0

slivar

genetic variant expressions, annotation, and filtering for great good.

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hdWGCNA

High dimensional weighted gene co-expression network analysis

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conos

R package for the joint analysis of multiple single-cell RNA-seq datasets

Language:RLicense:GPL-3.0Stargazers:191Issues:0Issues:0

hahmmr

Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq

Language:RLicense:NOASSERTIONStargazers:13Issues:0Issues:0