No `CdsStartLoss` and `CdsStopLoss` functionality
jpiper opened this issue · comments
jpiper commented
It appears that whilst CdsStartLoss
and CdsStopLoss
appear in the documentation, this functionality does not exist.
Wanding Zhou - Bioinformatics commented
sorry, it was CdsStartLoss and CdsStopLoss, but got changed to CdsStartSNV recently. The documentation is updated. http://transvar.readthedocs.io/en/latest/interpret_variant_consequence.html. CdsStartDeletion and CdsStopDeletion is also added. please see
http://transvar.readthedocs.io/en/latest/annotation_from_genomic_level.html#coding-start-and-stop
I have notice some missing with the CCDS database. I am looking into this. But surely let me know if you see other counter-examples.
Thanks,