Could not find inferPlatformFromProbeIDs function
jtxyz16 opened this issue · comments
betas = openSesame(sdfs, platform = "MM285", prep = "TQCDPB", manifest = mft)
Error: BiocParallebetas = openSesame(sdfs, platform = "MM285", prep = "TQCDPB", manifest = mft)
Error: BiocParallel errors
1 remote errors, element index: 1
14 unevaluated and other errors
first remote error: could not find function "inferPlatformFromProbeIDs"l errors
1 remote errors, element index: 1
14 unevaluated and other errors
first remote error: could not find function "inferPlatformFromProbeIDs"
inferPlatformFromProbeIDs is in the updated sesameData package which sesame depends on. Please update and see if problem persist
Thank you for the speedy reply. It's fixed now. I have another issue. I want to use SigDFsToRGSet, for downstream usage in compartmap (https://rdrr.io/bioc/compartmap) . But I'm having this error. Can you help me convert the SeSame file into an rgSet? I'm processing mouse data.
Error in platformSmToMinfi(pt) :
plf %in% c("IlluminaHumanMethylationEPIC", "IlluminaHumanMethylation450k", .... is not TRUE
Yeah, I am not sure the mouse manifest for minfi is around yet. but I can add that if there is one.