zwdzwd / sesame

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

sesameDataCache() ERROR: ExperimentHub Caching fails

hicihee opened this issue · comments

When running sesameDataCache() , the following error continues to occur. Although the ExperimentHub's cache file exists in the correct location, an error continues to occur. I don't know what's wrong.

sesame_checkVersion()
SeSAMe requires matched versions of R, sesame, sesameData and ExperimentHub.
Here is the current versions installed:
R: 4.3.2
Bioconductor: 3.18
sesame: 1.20.0
sesameData: 1.20.0
ExperimentHub: 2.10.0

sesameDataCache()
Metadata (N=91):

ExperimentHub Caching fails:
error in evaluating the argument 'x' in selecting a method for function 'query': Invalid Cache: sqlite file
Hub has not been added to cache
Run again with 'localHub=FALSE'

ExperimentHub(localHub = FALSE)
Cannot connect to ExperimentHub server, using 'localHub=TRUE' instead
Using 'localHub=TRUE'
If offline, please also see BiocManager vignette section on offline use
.updateHubDB(hub_bfc, .class, url, proxy, localHub):
Invalid Cache: sqlite file
Hub has not been added to cache
Run again with 'localHub=FALSE'

tools::R_user_dir("ExperimentHub", which="cache")
[1] "C:\Users\Admin\AppData\Local/R/cache/R/ExperimentHub"

Not sure if this is related to proxy/firewall as described in https://support.bioconductor.org/p/132864/. Have you tried setExperimentHubOption as described in that post before sesameDataCache?