raw data imported with readIDATpair has NAs
JoWhi opened this issue · comments
Hi, I've used sdf.raw <- lapply(searchIDATprefixes(idats.dir), readIDATpair) to read in my raw data, and find that there are already NAs in my beta matrix at this stage, prior to any preprocessing steps. If I read the same IDATs with minfi, the beta matrix is complete. What is being masked at this stage please, and why? Thanks