zhk8111's repositories
bedtools2
bedtools - the swiss army knife for genome arithmetic
diamond
Accelerated BLAST compatible local sequence aligner.
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
kraken2
The second version of the Kraken taxonomic sequence classification system
libpll-2
Phylogenetic Likelihood Library 2 - experimental
megahit
Ultra-fast and memory-efficient (meta-)genome assembler
mixcr
MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
modeltest
Best-fit model selection
msisensor-pro
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
MuPeXI
MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
pll-modules
High Level modules for the Low Level Phylogenetic Likelihood Library
sourcetracker2
SourceTracker2
tensorflow
An Open Source Machine Learning Framework for Everyone
trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
vdjtools
Post-analysis of immune repertoire sequencing data
VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)