zhenxing123

PANet

Code for our ICCV 2019 paper PANet: Few-Shot Image Semantic Segmentation with Prototype Alignment

awesome-semantic-segmentation

:metal: awesome-semantic-segmentation

CHAOS-evaluation

Evaluation code of CHAOS challenge in MATLAB, Python and Julia languages.

MRNet

Code for CVPR 2021 paper. "Learning Calibrated Medical Image Segmentation via Multi-rater Agreement Modeling".

AISD

Acute ischemic stroke dataset

deepmedic

BraTS2018-tumor-segmentation

We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.

dataset

医学影像数据集列表 『An Index for Medical Imaging Datasets』

NLL_anomaly_detection

A simple anomaly detection algorithm for medical imaging based on multi-atlas image registration and negative log likelihood.

CarveMix

MAML

[MICCAI 2021] The official code for "Modality-aware Mutual Learning for Multi-modal Medical Image Segmentation"

SSL4MIS

Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.

mri-image-segmentation-using-dl-models

my thesis works on mri image segmentation of brain tumour using deep learning models

Keras-Brats-Improved-Unet3d

3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation

mri-braintumor-segmentation

MRI Brain Tumor Segmentation - BraTS Challenge 2020

BrainTumorSegmentation

Brain tumor segmentation for BRATS2020

MNet

UNet-Zoo

A collection of UNet and hybrid architectures in PyTorch for 2D and 3D Biomedical Image segmentation

brain_segmentation

U_Net_for_Brain_Tumor_Segmentation

U-Net Brain Tumor Segmentation in TensorFlow

brain-tumor-segmentation

BrainTumorSegmentation

Brain tumor segmentation for Brats15 datasets

Brain-Tumor-Segmentation

Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation

visdom

A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Torch and Numpy.

Modified-3D-UNet-Pytorch

This repository implements pytorch version of the modifed 3D U-Net from Fabian Isensee et al. participating in BraTS2017

BraTS2018-tumor-segmentation

We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.

TransBTS

This repo provides the official code for : 1) TransBTS: Multimodal Brain Tumor Segmentation Using Transformer (https://arxiv.org/abs/2103.04430) , accepted by MICCAI2021. 2) TransBTSV2: Towards Better and More Efficient Volumetric Segmentation of Medical Images(https://arxiv.org/abs/2201.12785).

Medical-Transformer

Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021

CascadePSP

[CVPR 2020] CascadePSP: Toward Class-Agnostic and Very High-Resolution Segmentation via Global and Local Refinement

mmsegmentation

OpenMMLab Semantic Segmentation Toolbox and Benchmark.