zhengyabiao's repositories
bioperl-live
Core BioPerl 1.x code
Dart
DART – a fast and accurate RNA-seq mapper with a divide-and-conquer strategy
distribution-is-all-you-need
The basic distribution probability Tutorial for Deep Learning Researchers
echarts
A powerful, interactive charting and visualization library for browser
genome
Core modules used by the GMS
GenVisR
Genome data visualizations
liny00.github.io
Seqhealth Official Website
migec
A RepSeq processing swiss-knife
NextDenovo
Fast and accurate de novo assembler for third generation sequencing (TGS) reads
plotly
An interactive graphing library for R
Porechop
adapter trimmer for Oxford Nanopore reads
PrimateAI
deep residual neural network for classifying the pathogenicity of missense mutations.
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
PyVCF
A Variant Call Format reader for Python.
repaq
repack Illumina format FASTQ to a smaller binary file (.rfq), which can be further compressed by xz (.rfq.xz)
snakemake-workflows
An experimental repo for common snakemake rules and workflows
SOAPnuke
A MapReduce Acceleration supported Software for integrated Quality Control and Preprocessing of High-Throughput Sequencing Data
starcode
All pairs search and sequence clustering
tbdb
Standard database for the TBProfiler tool
test
Only for test.
wf-human-sv
Structural variation workflow (and benchmarking) using lra and cuteSV