Chunyu Zhao (zhaoc1)

zhaoc1

Geek Repo

Company:@czbiohub @pollardlab

Location:San Francisco

Home Page:https://www.linkedin.com/in/chunyu-zhao-21a1426b

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Organizations
sunbeam-labs

Chunyu Zhao's repositories

nanoflow

Bioinformatics pipeline for nanopore sequencing data

sunbeam_databases

lock down databases for sunbeam pipeline use

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dnabc_sunbeam

demultiplex Undetermined Fastq files, generate the data_fp folder for sunbeam. can be treated as the subworkflow of sunbeam.

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sunbeam_neutrino

Downstream analysis after using sunbeam pipeline.

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alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

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bioconda-recipes

Conda recipes for the bioconda channel.

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cortex

reference free variant assembly

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IGGsearch

Metagenomic species profiling with enhanced coverage of the human gut microbiome

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inStrain

Bioinformatics program inStrain

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mccortex

De novo genome assembly and multisample variant calling

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MIDAS

An integrated pipeline for estimating strain-level genomic variation from metagenomic data

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midas2-wiki

Auxiliary repo for developing the MIDAS2 documentation

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OrthoFinder

Phylogenetic orthology inference for comparative genomics

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PPanGGOLiN

Build a partitioned pangenome graph from genomes

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sc2-msspe-bioinfo

bioinformatics for sars-cov-2 msspe protocol

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sunbeam

an iridescent HTS pipeline

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xsnp

cross-sample snp analysis

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xsnp-gtpro

across samples snp analysis (gtpro)

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