Error: 'keyword_enrichment_from_GO' is not an exported object from 'namespace:simplifyEnrichment'
Jzwing opened this issue · comments
ht <- DynamicHeatmap(
- srt = pancreas_sub, lineages = c("Lineage1", "Lineage2"),
- use_fitted = TRUE, n_split = 6, reverse_ht = "Lineage1",
- species = "Mus_musculus", db = "GO_BP", anno_terms = TRUE, anno_keys = TRUE, anno_features = TRUE,
- heatmap_palette = "viridis", cell_annotation = "SubCellType",
- separate_annotation = list("SubCellType", c("Nnat", "Irx1")), separate_annotation_palette = c("Paired", "Set1"),
- feature_annotation = c("TF", "CSPA"), feature_annotation_palcolor = list(c("gold", "steelblue"), c("forestgreen")),
- pseudotime_label = 25, pseudotime_label_color = "red",
- height = 5, width = 2
- )
169 features from Lineage1,Lineage2 passed the threshold (exp_ncells>20 & r.sq>0.2 & dev.expl>0.2 & padjust<0.05):
Gcg,Iapp,Pyy,Chgb,Slc38a5,Rbp4,Lrpprc,Cck,2810417H13Rik,Chga...
'magick' package is suggested to install to give better rasterization.
Set ht_opt$message = FALSE
to turn off this message.
[2023-12-05 19:37:19] Start Enrichment
Workers: 8
Species: Mus_musculus
Loading cached db: GO_BP version:3.14.0 nterm:16010 created:2023-12-05 17:30:14
Permform enrichment...
|===========================================================================================================================| 100%
[2023-12-05 19:37:34] Enrichment done
Elapsed time:15.53 secs
Error: 'keyword_enrichment_from_GO' is not an exported object from 'namespace:simplifyEnrichment'
I tried update simplifyEnrichment, Problem solved.