Error:SCP::RunCellQC(srt = pancreas_sub)
Crorazon opened this issue · comments
May I ask how to solve this problem?
data("pancreas_sub")
pancreas_sub <- RunCellQC(srt = pancreas_sub)
function 'as_cholmod_sparse' not provided by package 'Matrix'Error insrt[[paste0("db.", dbm, "_class"), drop = TRUE]]
:
! ‘db.scDblFinder_class’ not found in this Seurat object
Backtrace:
- SCP::RunCellQC(srt = pancreas_sub)
- SeuratObject:::
[[.Seurat
(srt, paste0("db.", dbm, "_class"), drop = TRUE)
Hi @Crorazon, I also encountered the same problem after updating the version of seurat. I would like to ask what is your version of seurat?
According
#bwlewis/irlba#70
install.packages("Matrix", type = "source")
install.packages("irlba", type = "source")
works well for me.