zeromtmu's repositories
alphafold
Open source code for AlphaFold.
Alphafold2
Alphafold Api for protein Visualization
CCBR_GATK4_Exome_Seq_Pipeline
An easy-to-use, flexible variant calling pipeline for use on the Biowulf cluster at NIH
ClinVar
XGBoost classifiers to predict variant classification conflict
clinvar-miner
Website to analyze conflicting assertions in ClinVar
coding-guidelines
Coding guidelines and best practices for developers @uniport @embl-ebi
ColabFold
Making Protein folding accessible to all!
community-notebooks
Community notebooks for the lab
compchem
Computational Chemistry stuff
cs-video-courses
List of Computer Science courses with video lectures.
deep-learning-skooldio
Deep learning notebooks for Skooldio
detectDesign
toolkit for finding likely cas9 off-target binding and effect on gene expression, designing sgRNAs and pairs of sgRNAs with minimal off-target effect on gene-expression
EHR-Phenolyzer
A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
examples
GPT
gatk_pipeline
Pipeline for processing raw fastq files through SNP calling with GATK and subsequent filtering
gpt4-pdf-chatbot-langchain
GPT4 & LangChain Chatbot for large PDF docs
ibm3202
Google Colab Tutorials for IBM3202
ipyvizzu
Build animated charts in Jupyter notebook with a simple Python synthax.
ML-For-Beginners
12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all
openmm-tutorial-msbs
OpenMM tutorial for the MSBS course
panel
A high-level app and dashboarding solution for Python
popgen-notes
Population genetics notes
programmer-class-room
เอกสารประกอบการสอนทุกเนื้อหาในช่องยูทูป KongRuksiam Official
pydbsnp
Interface with dbSNP VCF data
pyhpo
A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology
PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
SARS-CoV-2_B.1.1.529_Spike-RBD_Predictions
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
SPDBUE
Jupyter-notebook for scraping protein structures from the Uniprot database.