-m flag vs NC from info field

[abolia]

Hi Zev,

Can you please help me understand how are the "-m" flag and "NC" related. To my knowledge, both relate to the # of soft clipped required at the breakpoint. I am using -m flag (minimum number of soft-clips supporting START) as 15 while running WHAM but I see that most of my calls still have NC < 15. It shouldn't actually report any SV that has soft clips collapsed into the consensus that are less than 15. Can you please clarify this one for me.

Thanks for your help.

Ashini

[Zev Kronenberg]

@abolia Thank you for pointing out the bug. I've fixed it. Let me know if you have any more problems.

The changes are in the repo.

[abolia]

Great.

Thanks,
Ashini