yujing1997

Yujing Zou's starred repositories

lime

Lime: Explaining the predictions of any machine learning classifier

Language:JavaScriptBSD-2-Clause11435 263 633

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Language:RMIT6207 107 7

Mask2Former

Code release for "Masked-attention Mask Transformer for Universal Image Segmentation"

Language:PythonMIT2378 29 228

lifelines

Survival analysis in Python

Language:PythonMIT2326 69 960

DeepSurv

DeepSurv is a deep learning approach to survival analysis.

Language:Jupyter NotebookMIT569 29 82

datamapplot

Creating beautiful plots of data maps

Language:PythonMIT453 12 17

auton-survival

Auton Survival - an open source package for Regression, Counterfactual Estimation, Evaluation and Phenotyping with Censored Time-to-Events

Language:PythonMIT313 9 75

pyfeats

Open source software for image feature extraction.

Language:PythonMIT185 9 11

medical-ai-research-foundations

Language:PythonApache-2.0180 14 5

AutoMunge

Tabular feature encoding pipelines for machine learning with options for string parsing, missing data infill, and stochastic perturbations.

Language:Jupyter NotebookBSD-3-Clause164 5 5

Dicom_RT_and_Images_to_Mask

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

Language:PythonGPL-3.086 4 23

MultiViz

[ICLR 2023] MultiViz: Towards Visualizing and Understanding Multimodal Models

Language:PythonMIT86 4 14

SALMON

SALMON: Survival Analysis Learning with Multi-Omics Neural Networks

Language:Python67 3 4

CoNIC

CoNIC Challenge

Language:Jupyter Notebook57 8 10

PID

[NeurIPS 2023, ICMI 2023] Quantifying & Modeling Multimodal Interactions

Language:PythonMIT46 4 1

image-processing-notebooks

Notebooks for the Image Processing videos

Language:Jupyter Notebook43 20

hs2p

Histopathology Slides Preprocessing Pipeline

Language:Python30 1 6

SurvLIMEpy

Local interpretability for survival models

Language:PythonGPL-3.023 7 2

PathoMCH

Language:PythonMIT2000

feature-reuse

Language:PythonMIT1600

IMPRESS

Language:PythonMIT10 10

ecg-attention-maps

Language:Python10 30

timeROC

:exclamation: This is a read-only mirror of the CRAN R package repository. timeROC — Time-Dependent ROC Curve and AUC for Censored Survival Data

Language:R8 30

SmallDataSSL

[ICIP 2023] Exploring Self-Supervised Learning for Low-Resource Medical Image Analysis, IEEE Intl. Conf. on Image Processing (ICIP), 2023 (accepted)

Language:PythonMIT6 20

HiMT

code for HiMT

Language:Python5 2 1

stain-normalization

H&E slides color normalisation using generative adversarial networks

Language:Python500

rocTree

ROC-guided survival trees and ensembles

Language:C++5 1 1

hta

Language:PythonMIT300

FeatureAnalysis

Language:Jupyter NotebookBSD-3-Clause300

hs2p

Histopathology Slides Preprocessing Pipeline

Language:Python100