yuanlizhanshi

rust

Empowering everyone to build reliable and efficient software.

gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

SummaryOfLoanSuspension

全国各省市停贷通知汇总

alphafold

Open source code for AlphaFold.

scanpy

Single-cell analysis in Python. Scales to >1M cells.

awesome-shiny-extensions

🐝 Awesome R and Python packages offering extended UI or server components for the web framework Shiny

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

scGPT

scihub.py

Python API and command-line tool for Sci-Hub

ChIP-seq-analysis

ChIP-seq analysis notes from Ming Tang

CMplot

📊 Circular and Rectangular Manhattan Plot

ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

Guideline-for-Computational-Biology-and-Bioinformatics

CellOracle

This is the alpha version of the CellOracle package

rMVP

:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

SnapATAC2

Single-cell epigenomics analysis tools

single-cell-transformer-papers

methylpy

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

scBasset

Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

2048GameAutoMovePython

使用python编写2048游戏及自动玩

DNA-methylation-analysis

DNA methylation analysis notes from Ming Tang

LOLA

Locus Overlap Analysis: Enrichment of Genomic Ranges

BLINK

BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions

MethylStar

A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.

Bio-Jobs

A list of positions (mostly biology-related) open to apply

IReNA

R package IReNA

NGSbartom

Ceto is an NGS analysis system put together in a collaboration between the Bartom computational Lab, the Shilatifard lab, and other scientists at Northwestern University. Scroll down to the bottom of the page for more detail.

TIGER

Toolkits Integrated for Genetic and Evolutionary Research

NGS_Workflow

Some NGS workflow created by snakemake

Gff3ToBed