yu-lab-vt / SynQuant

A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.

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Null Pointer Exception with an Image Opened

alexiadi opened this issue · comments

Hi,

I noticed that user PMLLancao posted an Issue about the same problem that I'm currently finding with SynQuant.

I have a .tif file open in Fiji, and when I click the SynQuantVid plugin under 'Plugins,' the 3D Particles - Data and Parameter Setting GUI does come up as it should as I've seen in the demo videos you've posted. However, once I click OK on these settings, I receive the same error that PMLLancao discussed:

image

I also receive another pop-up 'Log' window saying 'Pixel format not supported.'

image

Do you know what the issue may be?

Thank you for developing this plugin and your help!

@alexiadi Can you send us an example dataset? Let us replicate the error and then figure out the reason.

@alexiadi You can send the example to yug@vt.edu