yifangt

book-1

algorithm

analysis_on_the_story_of_a_stone

Analysis on the novel "the Story of a Stone"

ancient-chinese

Ancient Chinese books.

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bwt-rewrite

cliquer

code

代码记录

cosmos

[Show :heart: love by 🌟] Your personal library of every algorithm and data structure code that you will ever encounter

cws_evaluation

Java开源项目cws_evaluation：中文分词器分词效果评估对比

d3

Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

etc

Some useful development scripts

FM-Index

FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental results.

fqtools

An efficient FASTQ manipulation suite

gitbook-hongloumeng

《红楼梦》电子书

hisat2

Graph-based alignment (Hierarchical Graph FM index)

htslib

C library for high-throughput sequencing data formats

jieba

结巴中文分词

jsoncpp

A C++ library for interacting with JSON.

kmer_search

simple utility to count k-mers in fasta file

mirdeep2

Discovering known and novel miRNAs from small RNA sequencing data

postman_problems

Graph optimization solutions and implementations to the Postman Problems from graph theory.

PythonHLM

用Python读红楼

reality-of-Dream-of-Red-Mansions

Comparision analysis of words use between 1~80 chapters and 80~120 chapters of 《A Dream of Red Mansions》.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

sdsl-lite

Succinct Data Structure Library 2.0

simple-Hongloumeng-analyzing

SingleCellPCAplot

SingleCellPCAplot is an R script for the principal component analysis of single cell RNAseq data. The script will take as an input the processed mastertable with RPKM values and perform a PCA clustering and highlight in a gradient scale the expression of the gene of interest (provided as the first argument).

ssw

striped smith waterman implementation

THULAC

An Efficient Lexical Analyzer for Chinese