yeeus / GCI

A program for assessing the T2T genome continuity

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

can you make the depth plot a stand-alone function?

comery opened this issue · comments

Nice tool!

If I didn't add "-p" to generate the depth plot at first, I have to run it again, which is much more time-consuming. Could you make it a stand-alone function?

That's a good suggestion, I will make this issue open until I add this funtion to the utilities.

I'm sorry for the delay in replying. Because the "plot" function in GCI.py needs the depth list generated by the "filter" function, you may need to provide the generated depth file (with "-g" option) even if there is a stand-alone function for plotting. However, I have made it (in the directory "utility"), and all you need is to rerun GCI.py and get the depth file.