yanjunzan's repositories
computational_biology
course material
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
biocode
Bioinformatics code libraries and scripts
CMplot
📊 Circular and Rectangular Manhattan Plot
DIP
UCLA QCBio Collaboratory workshop 21: Digital Image Analysis with Python
FreebayesSnakemake
Freebayes Snakemake pipline
functional-annotation
Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
grenepipe
Snakemake pipeline for variant calling from raw sequences
leafcutter-pipeline
Differential splicing and visualisation pipeline for the Raj lab
plinkQC
R package for quality control of plink genetic datasets
RNA-Snakemake
RNA-Snakemake
scikit-learn-videos
Jupyter notebooks from the scikit-learn video series
scripts
Scripts for analysis used during the course
scRNA.seq.course
Analysis of single cell RNA-seq data course
snakeSV
Snakemake pipeline for SV discovery and analysis
SolEvo_PotatoDele
Use hifi to assembly the Sol genome, and dissecting Sol evo
TGG
tomato graph pangenome
train-aquafaang-bioinf
AQUA-FAANG Bioinformatics training course on regulatory elements
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
xalpha
基金投资管理回测引擎
yanjunzan.github.io
Zan Lab