yangj9932's repositories
ChIP-seq-analysis
ChIP-seq analysis notes from Tommy Tang
canu
A single molecule sequence assembler for genomes large and small.
circlize
Circular visualization in R
clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
CNCI
Coding-Non-Coding Index (CNCI)
DESeq2
Guide for the Differential Expression Analysis of RNAseq data using DESeq2
DNA-seq-analysis
my notes on whole exome and whole genome sequencing analysis
drawProteins
Creating package to draw proteins from Uniprot API
ensembl-pipeline
Job management for the Ensembl Genebuild pipeline
ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
heatmaply
Interactive Heat Maps for R Using plotly
MetagenomeScope
Web visualization tool for (metagenome) assembly graphs
my-R
a small collection for my R scripts
NGS-pipe
NGS-pipe: next-generation sequencing pipelines for precision oncology
pheatmap
Pretty heatmaps
RNA-seq-analysis
RNAseq analysis notes from Tommy Tang
RNA-sequencing-analysis-in-R
Analysis of RNA-seq data using DESeq2
RNA_seq_Biotrainee
DEG analysis and KEGG/GO enrichment analysis
RNASEQ_HISAT2_STRINGTIE
mRNA expression analysis using Hisat2 and Stringtie
seqtk
Toolkit for processing sequences in FASTA/Q formats
seurat
R toolkit for single cell genomics
STAR
RNA-seq aligner
StringTieScripts
shell scripts for StringTie pipeline
Subread_to_DEXSeq
A way to use FeatureCounts output for DEXSeq