[bug] Right panel disappears after showing as licorice
hikarino-my opened this issue · comments
When opening this structure and show it as licorice, the right panel disappears.
Thank you for reporting this problem. I'm checking why and which ingredient of this structure specifically causes the problem. If you find any other example to cause this, please share them here.
Well, actually...
The bug can be reproduced with a PDB file containing only the following content.
HETATM 2495 O HOH D 1 -7.311 6.502 33.153 1.00 22.30 O
Thank you for detailed investigation! This is consistent with my observation that removing hetatm stops the problem from happening. Especially, water parts seem doing something bad as you've shown.
Other structure with similarly isolated (non-bonded) atom like ion also cause this problem. I'll investigate why and fix this as soon as possible.
I've made an alternative page to debug
https://yakomaxa.github.io/PyMOL-Wasm/debugging.html
This page will be frequently modified and will be merged to main index.html if successfully debugged.
I fixed this problem (at least symptomatically) and now merging it to the main index.html. The problem was caused by forcing stick representation for every hetatom. The root cause of this symptom will be fixed.
Thanks for your quick reply.
I've confirmed that water molecules are now displayed, although I'm afraid the right panel still disappears after changing the representation.
I've also re-confirmed the problem... I'll try to solve this on this weekend if possible!
Memo: nb_sphere is doing something bad.
I solved this problem by cmd.set("nb_spheres_use_shader", 2) and merged changes to main index.html. Please reload the page and try it.
I have confirmed that this bug has been resolved.
Thank you!