Yagoub Adam's repositories
Africans-specific_ancestry-informative_SNPs
Africans specific ancestry informative SNPs
Biocontainers
Bioinformatics containers
CHM13
The complete sequence of a human genome
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Genome-Analyses
Test scripts for H3Africa Cross-Consortium Genome Analyses
mathematical_modeling_of_biology_system
This project has been engaged in the use of mathematical modeling in the Gene Regulatory System (GRN). Different mathematical models that are inspired in gene regulatory network such as Central dogma, Hill function, Gillespie algorithm, Oscillating gene network, and Deterministic vs Stochastic modelings are discussed along with their codes that are
MCMC-Sample-Codes
Code for simple Markov Chain Monte Carlo simulations, for beginners
postGWAS_plot
scripts for plotting and evaluating GWAS summary statistics
biomarkers
Genetics of blood and urine biomarkers in the UK Biobank
fastq-dl
Download FASTQ files from SRA or ENA repositories.
gatk
Official code repository for GATK versions 4 and up
GenoTools
A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT
Intro-to-Computation-and-Programming
Introduction to Computation and Programming Using Python
js4ds
JavaScript for Data Science
LocusExplorer
An interactive graphical illustration of genetic associations and their biological context
logo
logos to be used in web applications
post-GWAS-pipeline
A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
sib-swiss-training-collection
Collection of bioinformatics training materials
singularity
Singularity: Application containers for Linux
SkeeterBuster
Aedes aegypti population dynamics simulation model.
SPGWAS2
Testing scripts for SPGWAS project II