A question of filter criteria in guide paper
xxYaaoo opened this issue · comments
Hello Dr.Chen,
Learning from the step-by-step guide on using ERVcaller, I'm curious about the filter criteria in step03. What's the difference between 'variable 2' and 'variable 5'?And for the data with average read depth over 45, should I adjust the filter criteria to some extent?
Besides, expecting your advice for how to set the -S and -n parameter in calling step, if the read length is 100bp.~
Thank you so much!
Yaaoo
Sorry for the confusion, I think variable 2 is to filter by the aggregated DPIs across samples and variable 5 is to filter by the minimum DPIs per site per sample. And I think the variable for the per sample one will be more important.
Thanks,
Xun