xu-dan

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

trimmomatic

Read trimming tool for Illumina NGS data.

awesome-java

A curated list of awesome frameworks, libraries and software for the Java programming language.

awesome-go

A curated list of awesome Go frameworks, libraries and software

vitess

Vitess is a database clustering system for horizontal scaling of MySQL.

godropbox

Common libraries for writing Go services/applications.

fabric

Simple, Pythonic remote execution and deployment.

sh

Python process launching

grumpy

Grumpy is a Python to Go source code transcompiler and runtime.

joe

:running: A .gitignore magician in your command line

pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

plumbum

Plumbum: Shell Combinators

pip-tools

A set of tools to keep your pinned Python dependencies fresh.

moto

A library that allows you to easily mock out tests based on AWS infrastructure.

terragrunt

Terragrunt is a flexible orchestration tool that allows Infrastructure as Code written in OpenTofu/Terraform to scale.

meson

The Meson Build System

aws-dynamodb-encryption-java

Amazon DynamoDB Encryption Client for Java

awesome-nlp

:book: A curated list of resources dedicated to Natural Language Processing (NLP)

noms

The versioned, forkable, syncable database

rexray

REX-Ray is a container storage orchestration engine enabling persistence for cloud native workloads

guake

Drop-down terminal for GNOME

coding-interview-university

A complete computer science study plan to become a software engineer.

path

Object-oriented file system path manipulation

strata-tutorial-2016-nyc

director-scripts

Cloudera Director sample code

vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.