Giters

xiaoyeye / CNNC

covolutional neural network based coexpression analysis

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Question about data files

jjfeng opened this issue · comments

commented

Hi!

I'm interested in training a variant of CNNC and am starting with reproducing the experiment to Predict TF–Gene Interactions. My understanding is that I have to train on the data in the files data/bone_marrow_gene_pairs_200.txt, data/dendritic_gene_pairs_200.txt, and data/mesc_gene_pairs_400.txt. However, I'm confused why the labels come from three categories instead of 2. I thought this was a binary prediction task? Are the labels actually placeholder labels?

Thanks!

commented

Never mind! I see that you are providing the directionality of the interactions in the training data files, but the trained model for TF-gene interactions is actually a binary outcome.