Xiaofei-git's repositories
biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
cyverse-sdk
A resource for CyVerse developers
cyverse_agave_apps
A collection of files related to Roger Barthelson's Agave API apps available through the Cyverse Discovery Environment.
LIMMA-pipeline-proteomics
LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment
maizecode
Homepage for the MaizeCode project on leveraging the CyVerse infrastructure
Methylation_Analysis
Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis
nanostring
codes for analysis of TNBC nanostring immune panel data
PARpipe
Complete analysis pipeline for PAR-CLIP data
RyanLab
Repository for supplementary materials produced by the Ryan Lab
tiny_python_projects
Code for Tiny Python Projects (Manning, 2020, ISBN 1617297518). Learning Python through test-driven development of games and puzzles.