Witold Wydmański's repositories
cosine-dim-reduct
Notebooks and pytorch models for "Cosine similarity preserving dimensionality reduction of dense embedding vectors" talk at ISMB 2022
gender-extractor
A tool that tries to guess the gender of a person given a name.
molecular-optimization
A transformer-based molecular optimization framework. Optimize any molecule using an arbitrary scoring function while maintaining its integrity and purpose.
biobert-torchserve
Torchserve application with providing biomedical text embeddings
crs19-monitor
Monitor of SARS-CoV-2 variants and mutations
data_loader
A helper script for loading tabular datasets
deep_dreaming_dogs
CNN filter visualisation algorithm with training included
effective_python
Effective Python programming (in Polish, maybe in English in near future)
ExMAS
Exact Matching of Attractive Shared rides (ExMAS) for system-wide strategic evaluations
FourierFighters
A game in which you yield the power of digital signal processing and use it to banish foes
metagenome_assembly
WDL Workflow for metagenome assembly
NL-Augmenter
NL-Augmenter 🦎 → 🐍 A Collaborative Repository of Natural Language Transformations
primer-schemes
Primer schemes for real-time genome epidemiology
query_PT
Query public transport connections for a set of trip requests (from given origin to a destination at given departure time)
raga-llm-hub
Framework for LLM evaluation, guardrails and security
sra-downloader
A script for batch-downloading data from SRA built on SRA-Toolki
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
ViT-pytorch
Pytorch reimplementation of the Vision Transformer (An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale)
vllm
A high-throughput and memory-efficient inference and serving engine for LLMs
worker-vllm
The RunPod worker template for serving our large language model endpoints. Powered by vLLM.