wushyer

Shuangyang Wu's repositories

Add multiple thread function for genome comparison

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MITP: A miRNA Identification and Target prediction tool for Plants

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RNA Editing Detection in Organelle based on variant calling results

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Reference based genome assembly and annotation tool for new genome and known genome upgrade

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The 93-11 genome project resource, including assembly, annotation and related scripts.

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A pipeline used to identify different modes of duplicated gene pairs

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TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

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UCSC command line bioinformatic utilities

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Benchmarking computational single cell ATAC-seq methods

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The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".

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