Segfault Error when running example

Question

Segfault Error when running example

mpearmain opened this issue 9 years ago · comments

*** caught segfault ***
address 0x7f552477e348, cause 'memory not mapped'

Traceback:
1: .Call("IPinYouExp_OnlineSimulation", PACKAGE = "IPinYouExp", Rm, Rlearner_ctr, Rlearner_wr, is_click, is_win, bid_t, clk_t, is_continue)
2: OnlineSimulation(m, learner_ctr, learner_wr, bidimpclk$is_click, bidimpclk$is_win, bidimpclk$bid_t, bidimpclk$clk_t, i != 1)
aborting ...
make: *** [.fig9] Error 139

Wush Wu · Answer 1 · Mon Oct 26 2015 22:54:17 GMT+0800 (China Standard Time)

@mpearmain
Does 684f8c8 fix your issue?

Michael Pearmain · Answer 2 · Mon Oct 26 2015 23:13:38 GMT+0800 (China Standard Time)

Hi,

Im afraid not, ive the current master branch.
Only looks to fail on

docker run --rm -v
/home/mpearmain/gitpackages/KDD2015wpp:/var/local/KDD2015wpp
wush978/kdd2015wpp Rscript PredictCTR_WR_Fig9.R && docker run --rm -v
/home/mpearmain/gitpackages/KDD2015wpp:/var/local/KDD2015wpp
wush978/kdd2015wpp Rscript WinningPrice_Fig9.R | tee
log/WinningPrice_Fig9.log && touch .fig9

On Mon, 26 Oct 2015 at 14:54 Wush Wu notifications@github.com wrote:

@mpearmain https://github.com/mpearmain
Does 684f8c8
684f8c8
fix your issue?

—
Reply to this email directly or view it on GitHub
#3 (comment).

Wush Wu · Answer 3 · Mon Oct 26 2015 23:17:30 GMT+0800 (China Standard Time)

Dear @mpearmain ,

I think this is an environment dependent issue. I'll re-run this image again tonight. Could you provide me the following information?

Are you using the docker image or your own R environment?
Could you print the result of sessionInfo() after loading all required libraries? I need to identify the version of the packages you are using.

Thanks.

Michael Pearmain · Answer 4 · Mon Oct 26 2015 23:24:44 GMT+0800 (China Standard Time)

Hi im using the Docker image

Sending build context to Docker daemon 299.5 kB
Step 0 : FROM rocker/r-base
---> d8bc80a8b433
Step 1 : MAINTAINER Wush Wu wush978@gmail.com
---> Using cache
---> 5fe10a9ba78e
Step 2 : RUN apt-get update
---> Using cache
---> a4c5da980447
Step 3 : RUN echo "options(repos=c(cran='http://cran.rstudio.com/'))" >
/root/.Rprofile
---> Using cache
---> 3fb259c144f3
Step 4 : RUN Rscript -e "install.packages('dplyr')" && Rscript -e
"install.packages('data.table')"
---> Using cache
---> ffb1e7d4e1bf
Step 5 : RUN apt-get update
---> Using cache
---> 34aba04b6334
Step 6 : RUN apt-get install -y --no-install-recommends libxml2-dev
libcurl4-nss-dev libssl-dev ca-certificates git && Rscript -e
"install.packages(c('roxygen2', 'glmnet', 'FeatureHashing'))" && cd /root
&& git clone https://github.com/wush978/FastROC && R CMD INSTALL FastROC
---> Using cache
---> d95afa84423d
Step 7 : RUN Rscript -e "install.packages('knitr')" && Rscript -e
"install.packages('rmarkdown')"
---> Using cache
---> df3a0506b178
Step 8 : COPY IPinYouExp /root/IPinYouExp
---> Using cache
---> a815f3abe94e
Step 9 : RUN cd /root && R CMD INSTALL IPinYouExp
---> Using cache
---> b89ea9b9bb9b
Step 10 : VOLUME /var/local/KDD2015wpp
---> Using cache
---> 617a223d2c13
Step 11 : WORKDIR /var/local/KDD2015wpp
---> Using cache
---> 8bdda399fdfa
Successfully built 8bdda399fdfa

And session info:

sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.3 LTS

locale:
[1] LC_CTYPE=en_SG.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_SG.UTF-8 LC_COLLATE=en_SG.UTF-8
[5] LC_MONETARY=en_SG.UTF-8 LC_MESSAGES=en_SG.UTF-8
[7] LC_PAPER=en_SG.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_SG.UTF-8 LC_IDENTIFICATION=C

On Mon, 26 Oct 2015 at 15:17 Wush Wu notifications@github.com wrote:

Dear @mpearmain https://github.com/mpearmain ,

I think this is an environment dependent issue. I'll re-run this image
again tonight. Could you provide me the following information?

Are you using the docker image or your own R environment?

Could you print the result of sessionInfo() after loading all
required libraries? I need to identify the version of the packages you are
using.

Thanks.

—
Reply to this email directly or view it on GitHub
#3 (comment).

Michael Pearmain · Answer 5 · Mon Oct 26 2015 23:29:14 GMT+0800 (China Standard Time)

as an aisde Looking at the make file in line 5 you have:
all : .predict_wp .fig9 .winningpricectr
line 37 .winningprice_ctr

Wush Wu · Answer 6 · Wed Oct 28 2015 09:29:16 GMT+0800 (China Standard Time)

@mpearmain, thanks for your report.

I can reproduce this bug on my machine now. The valgrind reports two illegal read of memory and I need sometimes to figure it out...

Wush Wu · Answer 7 · Mon Nov 02 2015 21:58:05 GMT+0800 (China Standard Time)

Just an update:

I failed to create a minimal reproducible example of this issue (It failed if I directly make the project but the valgrind did not capture any memory error if I execute the script. That's strange!). I'll try to build the minimal example next weekend.

Wush Wu · Answer 8 · Wed Nov 18 2015 22:16:42 GMT+0800 (China Standard Time)

Hi @mpearmain,

Sorry for the late fix. Could you help me check if #4 fix your issue?

Thanks.

jacky168 · Answer 9 · Tue Aug 30 2016 22:28:20 GMT+0800 (China Standard Time)

I have encountered similar problem, the error message is presented below.

(2016-08-30 14:22:07) processing 2013-10-24...

FALSE TRUE
238686 348 6863
online_simulation.cpp 87

*** caught segfault ***
address 0x7f221e4180b0, cause 'memory not mapped'

Traceback:
1: .Call("IPinYouExp_OnlineSimulation", PACKAGE = "IPinYouExp", Rm, Rlearner_ctr, Rlearner_wr, is_click, is_win, bid_t, clk_t, is_continue)
2: OnlineSimulation(m, learner_ctr, learner_wr, bidimpclk$is_click, bidimpclk$is_win, bidimpclk$bid_t, bidimpclk$clk_t, i != 1)
An irrecoverable exception occurred. R is aborting now ...
Makefile:35: recipe for target '.fig9' failed
make: *** [.fig9] Error 139