tracking_evaluation
Reimplementation of TRA measure https://www.nature.com/articles/nmeth.4473
based on Acyclic Oriented Graph Matching (AOGM): https://www.nature.com/articles/nmeth.4473
graph creation and morality checks copied from: https://github.com/funkey/flywing/tree/master/04_evaluate
to start evaluation: python evaluate.py -r <result_file> -g <gt_file>
further parameter: -o <output_file> -p <[dilate|watershed|dilate3d|watershed3d]> -i <ignore_pixel> --recreate_track