wolny / paintera_tools

Tools for generating, curating and merging paintera datasets

paintera_tools

Tools for genetrating, curating and merging paintera datasets.

Functionality

This package provides functionality to interacte with paintera datasets. The three main applications are:

• convert n5 or h5 container to paintera dataset via convert_to_paintera_format
• split objects via interactive_splitter or batch_splitter
• export merge segmentation via serialize_from_commit

Installation

You can install this package via conda (only python 3.7 and linux for now):

conda install -c conda-forge -c cpape paintera_tools

To set up a developement environment, you will need cluster_tools and its dependencies.

Usage

For usage examples see examples/. You can obtain the example cremi data from here.