Will Trimble's repositories
2018-10-05-UCSF-Python
Page for 2018-10-05 Python UCSF workshop
MGRASTer
API Client for the MG-RAST Server
matR
Metagenomics Analysis Tools
Skyport2
Infrastructure setup for app/service development.
cwltool
Common Workflow Language reference implementation
argonnesoils2017tutorial
repo for 2016 EDAMAME tutorials
myM5NR
local version of M5NR
khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
2016-sourmash-tax
Taxonomic breakdown of metagenomes using sourmash.
pyani
Python module for average nucleotide identity analyses
ea-utils
Automatically exported from code.google.com/p/ea-utils
idemp
Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
vitalsigns-departmentdirectory
This repository contains data and scripts to show lists of doctors at and highlights of the CMS sunshine data.
qiime_tutorial
qiime_tutorial
cloud-kmers
Lesssons on analyzing high-thoughput sequencing datasets by counting kmers on cloud computing instances
thumbnailpolish
Scripts to visualize the thumbnail images from illumina sequencing machines
tnseq
documentation and scripts for analyzing Tn-seq data