Napari-correct-drift brings the functionality of Fiji’s popular Correct-3D-drift macro to Napari for flexible and efficient correction of stage and sample drift common in time-lapse microscopy.
Napari-correct-drift supports drift correction for 2D/3D multi-channel data.
root_2_screencast.mp4
Napari-correct-drift contains synthetic sample data. To test it on real data download an example Arabidopsis growing root tip file.
You can install napari-correct-drift via [pip]:
pip install napari-correct-drift
To install latest development version :
pip install git+https://github.com/sommerc/napari-correct-drift.git
- Basic CorrectDrift interface
- Synthetic test data
- Unit tests
- 2D/3D multi-channel support
- ROI support (rectangles)
- Saving and loading of drift tables
- pyGPUreg backend
- Outlier handling
- Speed optimizations
- Sphinx documentation
- How-tos
- Tutorials and Guides
Contributions are very welcome. Tests can be run with [tox], please ensure the coverage at least stays the same before you submit a pull request.
Distributed under the terms of the [BSD-3] license, "napari-correct-drift" is free and open source software
This project has been made possible in part by grant number NP2-0000000051 from the napari Plugin Foundations Grants (Cycle 2).