wikk-chy / diff_tad_type

Analysis the type of diff_tad which from HicExplorer tools HicDifferentialTAD

diff_tad_type

Analysis the type of diff_tad which from HicExplorer tools HicDifferentialTAD
more infomation see the PPT file(diff_tad_type.pptx)

input file

test_differential_rejected.diff_tad(diff tad file)
test_tad_domains.bed(test tad file)
control_tad_domains.bed(control tad file)

output file

differential_tad.bed
test_tad.bed
control_tad.bed
differential_tad_control_tad_intersect.tsv
control_tad_differential_tad_intersect.tsv
test_to_control_shift.csv
test_to_control_separate.csv
test_to_control_fusion.csv
tad_type_boundary.csv

package

bedtools: https://bedtools.readthedocs.io/en/latest/

useage

python diff_tad_type.py diff_tad_file test_tad_file control_tad_file out_dir percent  

more

percent = percent_conserve = percent_change = (0,1), defaults is 0.1