Bill Flynn's repositories
sc-marker-genes
Sets of marker genes used to identify cell types in scRNA-seq experiments
single-cell-methods
Meta repo linking single-cell RNA-seq tool aggregation repos
biorxivfeed
Simple RSS feed reader and downloader for bioRxiv
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
CITE-seq-Count
Small script that allows to count TAGS from a CITE-seq experiment
colorblindr
An R package to simulate colorblindness on R figures.
gender-disparities
Gender disparities in science, funding, and more
IntroToHPC
HPC and queue usage class syllabus
JAX-NeuroGeneticsSClDataAnalysis
JAX: Neurogenetics Short Course Single cell data analysis
JAX-Sleep-AD-2022
Single Cell and Spatial Workshop, part of the Impacts of Sleep and Circadian Biology on Alzheimer’s Disease and Aging Short Course
keystone-single-cell-2019
Notes from the 2019 Keystone Symposium on Single Cell Biology
MEDS6498-2019
Lecture notes on single cell genomics for MEDS6498-2019
python-novice-gapminder
Introduction to Python for non-programmers using gapminder data
PythonImagingBasic
code and data for Basic Image Analysis in Python class
sc-sifs
Singularity image files (.sif) for single cell genomic analyses
scanpy_usage
Scanpy use cases.
seqspec
machine-readable file format for genomic library sequence and structure
solo
software to detect doublets
tldr
:books: Simplified and community-driven man pages
umap
Uniform Manifold Approximation and Projection