Thomas Weber's repositories
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
ashleys-qc-pipeline
Strand-Seq Quality Control Pipeline based on ashleys-qc
ashleys_qc_dash
Dash web server to monitor ashleys-qc runs output
bioconda-recipes
Conda recipes for the bioconda channel.
dash-flask-login
Implementation of Flask-login on top of Dash.
dash-pivottable
react-pivottable in Dash
devcontainer_test
Devcontainer test
github-actions-demo
a demo of GitHub actions for a simple React App
mosaicatcher-pipeline
Integrated workflow for SV calling from single-cell Strand-seq data
MultiPage_Dash
Using Dash Pages to create multi page dash app.
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
panoptes-fastapi
Monitor computational workflows in real time
pooled-strandseq-demultiplexing
Identification of Strand-Seq pooled libraries based on 1000G SNP genotyping
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
snakemake-executor-plugin-slurm
A Snakemake executor plugin for submitting jobs to a SLURM cluster
StrandPhaseR
R Package for phasing of single cell Strand-seq data
workspace-images
Ready to use docker images for Gitpod workspaces