web4bio / webgen

WebGen Vertically Integrated Project

https://web4bio.github.io/webgen/main/html/

web4bio/webgen Issues

Inconsistencies between mutation data in data explore section compared to heatmap/violin plots
Closed a month ago1
Empty Intersection of Barcodes Errors Out Plots
Updated a year ago
Complete Deselection of Pie Chart Sectors Errors Out Query
Closed a year ago
Filter on Mutation or Clinical Feature Persists After Feature Is Deselected
Closed a year ago2
Gene Expression Cache Interface Errors
Updated a year ago
Verify Caching Doesn't Requery
Closed a year ago
Implement Caching for Clinical Data
Closed a year ago1
Create Caching for List of Barcodes
Closed a year ago1
Include Axes Labels for Heatmap
Closed 2 years ago
Create getter for global mutation data
Closed 2 years ago
Hide Explore, Gene Selection Data Sections until Tumor Type Fetch Processes
Updated 2 years ago
Consider alternative method to display distributions in Data Explore section
Updated 2 years ago8
stress-testing loki caching
Closed 2 years ago1
Heatmap visualization is too big for standard 1080p screen
Updated 2 years ago1
Display loading bar while heatmap is clustered
Updated 2 years ago
add jsdoc documentation for plots
Updated 2 years ago
Labels on data explore plots get cut off if they are too long
Updated 2 years ago3
Display loading icon until page loads completely
Closed 2 years ago1
BUG: uncaught errors on window resize
Closed 2 years ago
Modularize buildDataExplorePlots in createPieCharts.js
Closed 2 years ago
Population of clinical feature select box is too slow
Closed 2 years ago
Do not clear ALL pie charts when a single new gene or clinical feature is selected/deselected
Closed 2 years ago
orphaned function! displayNumberBarcodesAtIntersection()
Closed 2 years ago2
Data exploration plots populate one at a time
Closed 2 years ago
update url to gene pathway list json file
Closed 2 years ago3
Speed Up Post-Query Processes
Closed 2 years ago
Code breaks when user clicks on item in legend of a data explore plot
Closed 2 years ago1
No histogram showing up for years_to_birth
Closed 2 years ago1
Combine clinical data and mutation data into same object
Closed 2 years ago2
Show number of samples per violin curve in tooltip
Closed 2 years ago1
Clinical fetch function only returns 250 barcodes
Closed 2 years ago1
Histograms look like they are being clipped at a certain value
Closed 2 years ago1
Incorrect number of samples displayed
Closed 3 years ago1
Only one page of mutation data is ever returned
Closed 3 years ago1
Move clinical/gene checkbox to the left
Closed 3 years ago1
Identifying Optimal Query Size Parameters
Closed 3 years ago3
herokuapp base needs replacement
Closed 3 years ago
Only one page of mutation data is ever returned
Closed 3 years ago
thoughts on a common place to keep state of the app?
Closed 3 years ago1
make slides about app state for december 3 2021
Closed 3 years ago4
jsdocs: return type needs to be changed in getAllVariantClassifications
Closed 3 years ago
add jsdoc documentation for `fillSelectBoxes.js`
Closed 3 years ago1
bug: we only look for solid tumors but LAML is not a solid tumor (and related uncaught exceptions)
Closed 3 years ago
put data fetchers into one files/namespace
Closed 3 years ago
clinical data fetchers are not used
Closed 3 years ago1
standard style + linting + error checking
Closed 3 years ago5
Remove "Update Heatmap" and "Rebuild" buttons
Closed 3 years ago1
BUG: Uncaught (in promise) TypeError: x[currentFeature] is undefined
Closed 3 years ago3
Structure code into SDK
Closed 3 years ago
COADREAD, GBMLGG, KIPAN, and STES data are duplicated in pie charts
Closed 3 years ago6