vvcb's repositories
comorbidipy
Python package to calculate comorbidity scores including Charlson Comorbidity Score and Elixhauser Score and their weighted variants.
PatManPlus
Next-Gen Patient Lists for Junior Doctors - This will change the life of every junior doctor in the NHS and beyond!
dbt-synthea
[Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
diagrams
:art: Diagram as Code for prototyping cloud system architectures
doccano
Open source annotation tool for machine learning practitioners.
esp8266-firmware
DeviceHive esp8266 firmware. Control hardware via clouds with DeviceHive!
gpu-jupyter
Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.
guacamole-client
Mirror of Apache Guacamole Client
jupyter-guacamole
⚠️⚠️⚠️⚠️⚠️ Under development, insecure, do not use! ⚠️⚠️⚠️⚠️⚠️
keycloak-client
Python client for Keycloak
MedCAT
Medical Concept Annotation Tool
negspacy
spaCy pipeline object for negating concepts in text
OMOP_Alchemy
SQLAlchemy models for OHDSI OMOP Common Data Model
PaperScraper
A web scraping tool to systematically extract the text of scientific papers and corresponding metadata from university accessible journals.
pdfsizeopt
PDF file size optimizer
solrq
Python Solr query utility // http://solrq.readthedocs.org/en/latest/
tdriver
Python script to sort legacy patient docs.
vscode-binder
VS Code on Binder
WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.